MATERIALS PHYSICS RESEARCH

PUBLISHED JOURNAL ARTICLES 2008, JULKI CODE B1

1. J Samela and K Nordlund,
   Atomistic simulation of the transition from atomistic to macroscopic cratering,
   Phys Rev Lett 101 (2008) 027601, and cover of issue 2. Also selected to Virtual Journal of Nanoscale Science & Technology Vol. 18 Issue 3, 2008
2. S Huotari, K Hämäläinen, R Diamant, R Sharon, CC Kao and M Deutsch,
   Intrashell electron-interaction-mediated photoformation of hollow atoms near threshold,
   Phys Rev Lett 101 (2008) 043001
3. L Sun, AV Krasheninnikov, T Ahlgren, K Nordlund and F Banhart,
   Plastic deformation of single nanometer-sized crystals,
   Phys Rev Lett 101 (2008) 156101
4. P Kluth, CS Schnohr, OH Pakarinen, F Djurabekova, DJ Sprouster, R Giulian, MC Ridgway, AP Byrne, C Trautmann, DJ Cookson, K Nordlund and M Toulemonde,
   Fine structure in swift heavy ion tracks in amorphous SiO₂,
   Phys Rev Lett 101 (2008) 175503
5. V Tuboltsev, A Savin and J Räisänen,
   Electron-phonon coupling in ion implanted cobalt silicide below 1 K,
   Appl Phys Lett 92 (2008) 112102
6. TT Järvi, JA Pakarinen, A Kuronen and K Nordlund,
   Enhanced sputtering from nanoparticles and thin films: Size effects,
   Europhys Lett 82 (2008) 26002
7. I Riihimäki, A Virtanen, P Pusa, M Salamon, H Mehrer and J Räisänen,
   Si self-diffusion in cubic B20-structured FeSi,
   Europhys Lett 82 (2008) 66005
8. J Samela, K Nordlund, VN Popok and EEB Campbell,
   Origin of complex impact craters on native oxide coated silicon surfaces,
   Phys Rev B 77 (2008) 075309, this also has the description of the Samela-Watanabe potential
9. F Djurabekova and K Nordlund,
   Atomistic simulation of the interface structure of Si nanocrystals embedded in armorphous silica,
   Phys Rev B 77 (2008) 115325, also selected to Virtual Journal of Nanoscale Science & Technology Vol. 17 Issue 13, 2008
10. J Kotakoski and K Albe,
    First-principles calculations on solid nitrogen: A comparative study of high-pressure phases,
    Phys Rev B 77 (2008) 144109
11. Y Feng, J A Soininen, AL Ankudinov, JO Cross, GT Seidler, AT Macrander, JJ Rehr and EL Shirley,
    Exciton spectroscopy of hexagonal boron nitride using nonresonant x-ray Raman scattering,
    Phys Rev B 77 (2008) 165202
12. E Holmström, A Kuronen and K Nordlund,
    Threshold defect production in silicon determined by density functional theory molecular dynamics simulations,
    Phys Rev B (Rapid Comm) 78 (2008) 045202
13. A Mattila, J A Soininen, S Galambosi, T Pylkkänen, S Huotari, ND Zhigadlo, J Karpinski and K Hämäläinen,
    Electron-hole counts in Al-substituted MgB₂ superconductors from x-ray Raman scattering,
    Phys Rev B 78 (2008) 064517
14. M Knaapila, R Stepanyan, M Torkkeli, VM Garamus, F Galbrecht, BS Nehls, E Preis, U Scherf and AP Monkman,
    Control over phase behavior and solution structure of hairy-rod polyfluorene by means of side-chain length and branching,
    Phys Rev E 77 (2008) 051803
15. L D'Ulivo, J Chen, K Meinander, K Öörni, PT Kovanen and M-L Riekkola,
    In situ delipidation of low-density lipoproteins in capillary electrochromatography yields apolipoprotein B-100-coated surfaces for interaction studies,
    Anal Biochem 383 (2008) 38-43
16. K Nordlund, TT Järvi, K Meinander and J Samela,
    Cluster ion-solid interactions from meV to MeV energies,
    Appl Phys A 91 (2008) 561-566, invited paper
17. S Gasiorek, KP Lieb, PK Sahoo and J Keinonen,
    Na-irradiated alpha-quartz: chemical epitaxy and luminescence,
    Appl Phys B 93 (2008) 245-249
18. T Pilvi, E Puukilainen, K Arstila, M Leskelä and M Ritala,
    Atomic layer deposition of LaF₃ thin films using La(thd)₃ and TiF₄ as precursors,
    Chem Vap Dep 14 (2008) 85-91
19. K Nordlund and SL Dudarev,
    Interatomic potentials for simulating radiation damage effects in metals,
    Comptes Rendus Physique 9 (2008) 343-352
20. K Pirkkalainen, KA Riekki and IT Koponen,
    Two computational methods for describing size selected nanocluster growth and obtaining accurate cluster size distributions,
    Comp Mater Sci 43 (2008) 325-336
21. O Koskelo, U Köster, I Riihimäki and J Räisänen,
    Migration kinetics of ion-implanted beryllium in glassy carbon,
    Diamond & Related Materials 17 (2008) 1991-1993
22. MV Lindén, K Meinander, A Helle, G Yohannes, SJ Butcher, T Viitala and SK Wiedmer,
    Characterization of phosphatidylcholine/polyethylene glycol-lipid aggregates and their use as coatings and carriers in capillary electrophoresis,
    Electrophoresis 29 (2008) 852-862
23. TT Järvi, A Kuronen, M Hakala, K Nordlund, ACT van Duin, WA Goddard III and T Jacob,
    Development of a ReaxFF description for gold,
    Eur Phys J B (2008) 75-79
24. J Näränen, H Parviainen, K Muinonen, J Carpenter, K Nygård and M Peura,
    Laboratory studies into the effect of regolith on planetary X-ray fluorescence spectroscopy,
    Icarus 198 (2008) 408-419
25. T Fordell and Å M Lindberg,
    Noise correlation, regenerative amplification, and the linewidth enhancement factor of a vertical-cavity surface-emitting laser,
    IEEE Photonic Tech Lett 20 (2008) 667-669
26. O Koskelo, P Pusa, J Räisänen, U Köster and I Riihimäki,
    Diffusion of beryllium in Ge and Si–Ge alloys,
    J Appl Phys 103 (2008) 073513
27. S Negi, M Warrier, S Chaturvedi and K Nordlund,
    Molecular dynamics simulation of carbon nanotubes interacting with a graphite surface,
    J Comput Theor Nanosci 5 (2008) 348-353
28. AV Krasheninnikov,
    Atomistic computer simulations of irradiation-induced effects in nanostructured carbon materials,
    J Comput Theor Nanosci 5 (2008) 1828-1851
29. J Shan, P Pulkkinen, U Vainio, J Maijala, J Merta, H Jiang, R Serimaa, E Kauppinen and H Tenhu,
    Synthesis and characterization of copper sulfide nanocrystallites with low sintering temperatures,
    J Mater Chem 18 (2008) 3200-3208
30. C Björkas, K Nordlund, L Malerba, D Terentyev and P Olsson,
    Simulation of displacement cascades in Fe₉₀Cr₁₀ using a two band model potential,
    J Nucl Mater 372 (2008) 312-317
31. P Träskelin, O Saresoja and K Nordlund,
    Molecular dynamics simulations of C₂, C₂H, C₂H₂, C₂H₃, C₂H₄, C₂H₅, and C₂H₆ bombardment of diamond (111) surfaces,
    J Nucl Mater 375 (2008) 270-274
32. J Likonen, E Vainonen-Ahlgren, L Khriachtchev, JP Coad, M Rubel, T Renvall, K Arstila, DE Hole and contributors to the EFDA-JET work-programme,
    Structural investigation of re-deposited layers in JET,
    J Nucl Mater 377 (2008) 486-491
33. K Vörtler, C Björkas, D Terentyev, L Malerba and K Nordlund,
    The effect of Cr concentration on radiation damage in Fe-Cr alloys,
    J Nucl Mater 382 (2008) 24-30
34. N Juslin and K Nordlund,
    Pair potential for Fe-He,
    J Nucl Mater 382 (2008) 143-146
35. IS Ignatyev and T Sundius,
    Rearrangement and decomposition of (CH₃)₃M⁺ (M= Si, Ge, Sn) ions, A DFT study,
    J Organomet Chem 693 (2008) 2856-2862, doi:10.1016/j.jorganchem.2008.06.006
36. V Palonen, P Tikkanen and J Keinonen,
    A Bayesian measurement model; reliable uncertainties and control over instrumental drift,
    J Phys D: Appl Phys 41 (2008) 212001
37. H Ristolainen and IT Koponen,
    Phenomenological model of the quantum size effect on growth of nanosize towers in Pb/Si(111) and Pb/Cu(111),
    J Phys: Condens Matter 20 (2008) 175219
38. K Krug, L Porra, P Coan, A Wallert, J Dik, A Coerdt, A Bravin, M Elyyan, P Reschig, L Helfen and T Baumbach,
    Relics in medieval altarpieces? Combining x-ray tomographic, laminographic and phase-contrast imaging to visualize thin organic objects in paintings,
    J Synchrotron Radiat 15 (2008) 55-61
39. H Sternemann, C Sternemann, GT Seidler, TT Fister, A Sakko and M Tolan,
    An extraction algorithm for core-level excitations in non-resonant inelastic X-ray scattering spectra,
    J Synchrotron Radiat 15 (2008) 162-169
40. J Visniakov, E Gaubas, T Ceponis, A Uleckas, J Räisänen and S Väyrynen,
    Comparative investigation of recombination characteristics in proton and electron irradiated Si structures,
    Lithuanian J Phys 48 (2008) 137-144
41. H Cheun, X Liu, FJ Himpsel, M Knaapila, U Scherf, M Torkkeli and MH Winokur,
    Polarized optical absorption spectroscopy, NEXAFS, and GIXRD measurements of chain alignment in polyfluorene thin films,
    Macromolecules 41 (2008) 6463-6472
42. M Zgirski, K-P Riikonen, V Tuboltsev, P Jalkanen, T T Hongisto and K Yu Arutyunov,
    Ion beam shaping and downsizing of nanostructures,
    Nanotechnology 19 (2008) 055301
43. J Samela and K Nordlund,
    Emergence of non-linear effects in nanocluster collision cascades in amorphous silicon,
    New J Physics 10 (2008) 023013
44. Y Gan, J Kotakoski, AV Krasheninnikov, K Nordlund and F Banhart,
    The diffusion of carbon atoms inside carbon nanotubes,
    New J Physics 10 (2008) 023022
45. A Gurbich, I Bogdanovic-Radovic, M Chiari, C Jeynes, M Kokkoris, A R Ramos, M Mayer, E Rauhala, O Schwerer, S Liqun and I Vickridge,
    Status of the problem of nuclear cross section data for IBA,
    Nucl Instrum Meth B 266 (2008) 1198-1202
46. NP Barradas, K Arstila, G Battistig, M Bianconi, N Dytlewski, C Jeynes, E Kótai, G Lulli, M Mayer, E Rauhala, E Szilágyi and M Thompson,
    Summary of "IAEA intercomparison of IBA software",
    Nucl Instrum Meth B 266 (2008) 1338-1342
47. K Nordlund,
    Molecular dynamics for ion beam analysis,
    Nucl Instrum Meth B 266 (2008) 1886-1891
48. F Djurabekova, M Backman and K Nordlund,
    Atomistic modelling of the interface of Si nanocrystal structures in a-SiO₂ before and after ion irradiation,
    Nucl Instrum Meth B 266 (2008) 2683-2686
49. ÅM Lindberg, T Fordell and S Valling,
    Dynamics, bifurcations and chaos in coupled lasers,
    Phil Trans R Soc A 366 (2008) 427-435
50. IT Koponen and KA Riekki,
    Cluster growth poised on the edge of break-up: Size distributions with small exponent power-laws,
    Physica A 387 (2008) 2504-2510
51. O Lehtinen, L Sun, T Nikitin, A V Krasheninnikov, L Khriachtchev, J A Rodríguez-Manzo, M Terrones, F Banhart and J Keinonen,
    Ion irradiation of carbon nanotubes encapsulating cobalt crystals,
    Physica E 40 (2008) 2618-2621
52. V Skákalová, AB Kaiser, U Dettlaff, K Arstila, AV Krasheninnikov, J Keinonen and S Roth,
    Electrical properties of C⁴⁺ irradiated single-walled carbon nanotube paper,
    Phys Status Solidi B 245 (2008) 2280-2283
53. MT Räisänen, P de Almeida, K Meinander, M Kemell, I Mutikainen, M Leskelä and T Repo,
    Cobalt salen functionalised polycrystalline gold surfaces,
    Thin Solid Films 516 (2008) 2948-2956
54. C James, C Ravikumar, T Sundius, V Krishnakumar, R Kesavamoorthy, VS Jayakumar and IH Joe,
    FT-Raman and FTIR spectra, normal coordinate analysis and ab initio computations of (2-Methylphenoxy)acetic acid dimer,
    Vibr Spectrosc 47 (2008) 10-20

MEDICAL AND BIOPHYSICS

55. V R I Kaila and A Annila,
    Natural selection for least action,
    Proc Roy Soc Lond A 464 (2008) 3055-3070
56. RA Talja, M Peura, R Serimaa and K Jouppila,
    Effect of amylose content on physical and mechanical properties of potato-starch-based edible films,
    Biomacromolecules 9 (2008) 658-663
57. K Kisko, GR Szilvay, U Vainio, MB Linder and R Serimaa,
    Interactions of hydrophobin proteins in solution studied by small-angle x-ray scattering,
    Biophys J 94 (2008) 198-206
58. S Jaakkola, S El-Showk and A Annila,
    The driving force behind genomic diversity,
    Biophys Chem 134 (2008) 232-238
59. A Annila and E Kuismanen,
    Natural hierarchy emerges from energy dispersal,
    BioSystems, Online First, doi:10.1016/j.biosystems.2008.10.008
60. S Jaakkola, V Sharma and A Annila,
    Cause of chirality consensus,
    Curr Chem Biol 2 (2008) 153-158
61. S Bayat, L Porra, H Suhonen, T Janosi, S Strengell, W Habre, F Petak, Z Hantos, P Suortti and A Sovijärvi,
    Imaging of lung function using synchrotron radiation computed tomography: What's new?,
    Eur J Radiol 68S (2008) S78-S83
62. M Fernández, H Suhonen, J Keyriläinen, A Bravin, S Fiedler, M-L Karjalainen-Lindsberg, M Leidenius, K von Smitten and P Suortti,
    USAXS and SAXS from cancer-bearing breast tissue samples,
    Eur J Radiol 68S (2008) S89-S94
63. K Pirkkalainen, K Leppänen, U Vainio, MA Webb, T Elbra, T Kohout, A Nykänen, J Ruokolainen, N Kotelnikova and R Serimaa,
    Nanocomposites of magnetic cobalt nanoparticles and cellulose,
    Eur Phys J D 49 (2008) 333-342
64. A Annila and E Annila,
    Why did life emerge?
    Int J Astrobiol 7 (2008) 293-300
65. M Peura, T Karppinen, A Soovre, A Salmi, M Tenkanen, E Hæggström and R Serimaa,
    Crystallization and shear modulus of a forming biopolymer film determined by in situ x-ray diffraction and ultrasound reflection metehods,
    J Appl Phys 104 (2008) 023513
66. P Würtz and A Annila,
    Roots of diversity relations,
    J Biophys, Vol. 2008, Article ID 654672, 8 pages, doi:10.1155/2008/654672
67. JB Arellano, M Torkkeli, R Tuma, P Laurinmäki, TB Melø, TP Ikonen, SJ Butcher, RE Serimaa and J Psencik,
    Hexanol-induced order–disorder transitions in lamellar self-assembling aggregates of bacteriochlorophyll c in Chlorobium tepidum chlorosomes,
    Langmuir 24 (2008) 2035-2041
68. U Vainio, RA Lauten and R Serimaa,
    Small-angle x-ray scattering and rheological characterization of aqueous lignosulfonate solutions,
    Langmuir 24 (2008) 7735-7743
69. KJ Riley, PJ Binns, OK Harling, JR Albritton, WS Kiger III, A Rezaei, K Sköld, T Seppälä, S Savolainen, I Auterinen, M Marek, L Viererbi, VA Nievaart and RL Moss,
    An international dosimetry exchange for BNCT Part II: Computational dosimetry normalizations,
    Med Phys 35 (2008) 5419-5425
70. NE Kotel'nikova, EL Lysenko, R Serimaa, K Pirkkalainen, U Vainio, VK Lavrent'ev, DA Medvedeva, AL Shakhmin, NN Saprykina and NP Novoselov,
    Cellulose as a nanoreactor for the synthesis of nickel nanoparticles,
    Polymer Science Series A 50 (2008) 51-57
71. H Suhonen, L Porra, S Bayat, ARA Sovijärvi and P Suortti,
    Simultaneous in vivo synchrotron radiation computed tomography of regional ventilation and blood volume in rabbit lung using combined K-edge and temporal subtraction,
    Phys Med Biol 53 (2008) 775-791
72. J Keyriläinen, M Fernández, M-L Karjalainen-Lindsberg, P Virkkunen, M Leidenius, K von Smitten, P Sipilä, S Fiedler, H Suhonen, P Suortti and A Bravin,
    Toward high-contrast breast CT at low radiation dose,
    Radiology 249 (2008) 321-327
73. E Hippeläinen, P Nikkinen, T Ihalainen, J Uusi-Simola and S Savolainen,
    Personal radiation doses in PET/CT facility: Measurements vs. calculations,
    Radiat Prot Dosim 132 (2008) 57-63
74. S Linko, H Revitzer, R Zilliacus, M Kortesniemi, M Kouri and S Savolainen,
    Boron detection from blood samples by ICP-AES and ICP-MS during boron neutron capture therapy,
    Scand J Clin Lab Inv 68 (2008) 696-702
75. E Fager-Jokela, E Kaasalainen, K Leppänen, J Tois and J Helaja,
    Development of intermolecular additive free Pauson-Khand reactions for estrone E-ring extension using microwaves,
    Tetrahedron 64 (2008) 10381-10387
76. M Peura, M Müller, U Vainio, M-P Sarén, P Saranpää and R Serimaa,
    X-ray microdiffraction reveals the orientation of cellulose microfibrils and the size of cellulose crystallites in single Norway spruce tracheids,
    Trees 22 (2008) 49-61
77. M Peura, M-P Sarén, J Laukkanen, K Nygård, S Andersson, P Saranpää, T Paakkari, K Hämäläinen and R Serimaa,
    The elemental composition, the microfibril angle distribution and the shape of the cell cross-section in Norway spruce xylem,
    Trees 22 (2008) 499-510

ELECTRONICS RESEARCH

78. AE Wallin, H Ojala, E Hæggström and R Tuma,
    Stiffer optical tweezers through real-time feedback control,
    Appl Phys Lett 92 (2008) 224104
79. J Telenius, AE Wallin, M Straka, Z Hongbo, EJ Mancini and R Tuma,
    RNA packaging motor: From structure to quantum mechanical modelling and sequential-stochastic mechanism,
    Comp & Math Meth in Medicine 9 (2008) 351-369
80. P Forsman, A Tietäväinen, A Wallin and E Hæggström,
    Modeling balance control during sustained waking allows posturographic sleepiness testing,
    J Biomech 41 (2008) 2892-2894, doi:10.1016/j.jbiomech.2008.07.003
81. Y Huang, X Zhuang, EO Hæggström, AS Ergun, C-H Cheng and BT Khuri-Yakub,
    Capacitive micromachined ultrasonic transducers (CMUTs) with isolation posts,
    Ultrasonics 48 (2008) 74-81

DOCTORAL THESES, JULKI D1

Pia Forsman,
Quantifying time awake posturographically,
Report Series in Physics HU-P-D149, ISBN 978-952-10-3924-9, ISSN 0356-0961, ISBN 978-952-10-3925-6 (pdf), 43 + 30 pages

Timo Karppinen,
Characterizing physical properties of wetting paper by air-coupled ultrasound and light,
Report Series in Physics HU-P-D154, ISBN 978-952-10-4850-0, ISSN 0356-0961, ISBN 978-952-10-4851-7 (pdf), 58 + 25 pages

Timo Kiljunen,
Patient doses in CT, dental cone beam CT and projection radiography in Finland, with emphasis on paediatric patients,
Radiation and Nuclear Safety Authority STUK-A232, ISBN 978-952-478-407-8, ISSN 0781-1705, ISBN 978-952-478-408-5 (pdf), 62 + 54 pages

Kaisa Kisko,
Characterization of hydrophobin proteins at interfaces and in solutions using x rays,
Report Series in Physics HU-P-D156, ISBN 978-952-10-4223-2, ISSN 0356-0961, ISBN 978-952-10-4224-9 (pdf), 40 + 40 pages

Vesa Palonen,
Accelerator mass spectrometry and Bayesian data analysis,
Report Series in Physics HU-P-D148, ISBN 978-952-10-3261-5, ISSN 0356-0961, ISBN 978-952-10-3262-2 (pdf), 70 + 36 pages

Juha Samela,
Molecular dynamics studies of nanoparticle impacts,
Report Series in Physics HU-P-D150, ISBN 978-952-10-3926-3, ISSN 0356-0961, ISBN 978-952-10-3927-0 (pdf), 79 + 102 pages

TEXTBOOKS, JULKI CODE A4

CHAPTERS, ARTICLES IN HANDBOOKS AND CONFERENCE PUBLICATIONS, JULKI CODE B2

L Sun, Y Gan, JA Rodriguez-Manzo, M Terrones, AV Krasheninnikov and F Banhart,
In-situ electron irradiation studies of metal-carbon nanostructures,
In: EMC 2008 14th European Microscopy Congress 1-5 September 2008, Aachen, Germany, Springer Berlin Heidelberg, ISBN 978-3-540-85225-4 (Print) 978-3-540-85226-1 (Online), Part M1.4, pp. 121-122, doi:10.1007/978-3-540-85226-1_61

A Krasheninnikov,
Atomistic simulations of irradiation-induced phenomena in nanostructured carbon materials,
CSC Report on Computational Science 2006-2007, A Sillanpää, J Fagerholm, S Kotila, J Ahokas, P-L Forsström, E Järvinen, A-M Sarén, J Tarus and E Vitie (eds.), CSC - Scientific Computing Ltd., 2007, ISBN 978-952-5520-27-9, pp. 66-69

K Meinander, TT Järvi and K Nordlund,
Nanocluster deposition: modular construction at the atomic scale,
Ibid., pp. 70-74

K Meinander,
Nanovetenskap – en liten värld med stora möjligheter,
Reflexer, Nr 10, De Finlandssvenska Fysikdagarna 20.-22.10.2007, Redaktör K. Meinander, Yliopistopaino, Helsingfors, 2008, ISBN 978-952-92-3958-0, s. 8-13

K Nordlund, T Ahlgren, N Juslin och C Björkas,
Fusionsenergi: en framtida energiform?,
Reflexer, Nr 10, De Finlandssvenska Fysikdagarna 20.-22.10.2007, Redaktör K. Meinander, Yliopistopaino, Helsingfors, 2008, ISBN 978-952-92-3958-0, s. 31-41

C Björkas, K Vörtler, K Nordlund, D Terentyev och L Malerba,
Molekyldynamiska simuleringar av strålningsskador i FeCr,
Reflexer, Nr 10, De Finlandssvenska Fysikdagarna 20.-22.10.2007, Redaktör K. Meinander, Yliopistopaino, Helsingfors, 2008, ISBN 978-952-92-3958-0, s. 70-76

T Fordell och Å Lindberg,
Kaos i lasrar,
Reflexer, Nr 10, De Finlandssvenska Fysikdagarna 20.-22.10.2007, Redaktör K. Meinander, Yliopistopaino, Helsingfors, 2008, ISBN 978-952-92-3958-0, s. 85-89

N Juslin,
Materialsimulering på många skalor,
Reflexer, Nr 10, De Finlandssvenska Fysikdagarna 20.-22.10.2007, Redaktör K. Meinander, Yliopistopaino, Helsingfors, 2008, ISBN 978-952-92-3958-0, s. 90-93

K Hanhijärvi, J Aaltonen, I Kassamakov, K Grigoras, L Sainiemi, S Franssila and E Hæggström,
Effect of LED spectral shift on vertical resolution in stroboscopic white light interferometry,
Proc SPIE, Vol. 7003, 70031S (2008), doi:10.1117/12.780972

JULKI CODE B3

EDITORIAL ACTIVITY, JULKI CODE A3

POPULARIZING ARTICLES, JULKI CODE B5

K Meinander, Nanovetenskap - en möjlighet för framtiden, Dimensio 1/2008, s. 8-10

BOOKS, JULKI CODE A5

OTHER ARTICLES